Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01703.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2971
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:2840 original size:45 final size:45

Alignment explanation


    Indices: 2776--2864  Score: 169
    Period size: 45  Copynumber: 2.0  Consensus size: 45

       2766 TTATCACTCC

                                              *          
       2776 AAATTTTAGGTTGTCTTTCGCCTAATCAAATAGGTCTAACCCTGA
          1 AAATTTTAGGTTGTCTTTCGCCTAATCAAATAGGGCTAACCCTGA

                                                        
       2821 AAATTTTAGGTTGTCTTTCGCCTAATCAAATAGGGCTAACCCTG
          1 AAATTTTAGGTTGTCTTTCGCCTAATCAAATAGGGCTAACCCTG

       2865 CATAGTTTTG


Statistics
Matches: 43,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  45   43  1.00

ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35


Consensus pattern (45 bp):   
AAATTTTAGGTTGTCTTTCGCCTAATCAAATAGGGCTAACCCTGA
Done.