Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01704.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5498
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32


Found at i:2314 original size:3 final size:3

Alignment explanation


    Indices: 2306--2339  Score: 50
    Period size: 3  Copynumber: 11.3  Consensus size: 3

       2296 GTTAAATTTG

                                            * *          
       2306 GAT GAT GAT GAT GAT GAT GAT GAT AAG GAT GAT G
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G

       2340 TGGGTGATGA


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.35, C:0.00, G:0.35, T:0.29


Consensus pattern (3 bp):   
GAT

Done.