Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01713.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 771

Length: 1285
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28


Found at i:48 original size:5 final size:5

Alignment explanation


    Indices: 38--63  Score: 52
    Period size: 5  Copynumber: 5.2  Consensus size: 5

         28 CACCATAACA

                                           
         38 CTCTC CTCTC CTCTC CTCTC CTCTC C
          1 CTCTC CTCTC CTCTC CTCTC CTCTC C

         64 ATACTTTGAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   21  1.00

ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38


Consensus pattern (5 bp):   
CTCTC

Done.