Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01746.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 765

Length: 1275
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29


Found at i:1207 original size:29 final size:29

Alignment explanation


    Indices: 1150--1207  Score: 98
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       1140 CATTGAGCCT

                                    *    
       1150 ATTAGAGAACACCTTTTTCACCTCGATTG
          1 ATTAGAGAACACCTTTTTCACCTCAATTG

                                   *     
       1179 ATTAGAGAACACCTTTTTCACCTTAATTG
          1 ATTAGAGAACACCTTTTTCACCTCAATTG

       1208 TTCTAGATGT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  29   27  1.00

ACGTcount: A:0.29, C:0.22, G:0.12, T:0.36


Consensus pattern (29 bp):   
ATTAGAGAACACCTTTTTCACCTCAATTG
Done.