Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01750.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2292
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30


Found at i:1995 original size:53 final size:53

Alignment explanation


    Indices: 1854--2004  Score: 205
    Period size: 53  Copynumber: 2.8  Consensus size: 53

       1844 ATAAGTGCGC

                *                *            **                 
       1854 CCGTTTAAGACCATAGCTGGGTTATGGCATCGGTGCAATGTGATAATGTGACT
          1 CCGTATAAGACCATAGCTGGGATATGGCATCGGTATAATGTGATAATGTGACT

                                 *                             * 
       1907 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
          1 CCGTATAAGACCATAGCTGGGATATGGCATCGGTATAATGTGATAATGTGACT

                                         *                
       1960 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
          1 CCGTATAAGACCATAG-CTGGGATATGGCATCGGTAT-A-ATGTGA

       2005 ACCGTGTAAG


Statistics
Matches: 88,  Mismatches: 7, Indels: 4
        0.89            0.07        0.04

Matches are distributed among these distances:
  52    1  0.01
  53   80  0.91
  54    1  0.01
  55    6  0.07

ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30


Consensus pattern (53 bp):   
CCGTATAAGACCATAGCTGGGATATGGCATCGGTATAATGTGATAATGTGACT
Done.