Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01139.F11

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3172
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26


Found at i:434 original size:20 final size:21

Alignment explanation


    Indices: 409--447  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        399 AGAGCAATTG

                       *         
        409 TTCTTTT-TTGTTCTCCCTCT
          1 TTCTTTTCTTGGTCTCCCTCT

                               
        429 TTCTTTTCTTGGTCTCCCT
          1 TTCTTTTCTTGGTCTCCCT

        448 TTGAACTGAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  20    7  0.41
  21   10  0.59

ACGTcount: A:0.00, C:0.31, G:0.08, T:0.62


Consensus pattern (21 bp):   
TTCTTTTCTTGGTCTCCCTCT

Done.