Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01764.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3972
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33


Found at i:2266 original size:24 final size:24

Alignment explanation


    Indices: 2234--2284  Score: 102
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       2224 ACATCAGCTG

                                    
       2234 ATTGATTAATGTGAAAAACCATGA
          1 ATTGATTAATGTGAAAAACCATGA

                                    
       2258 ATTGATTAATGTGAAAAACCATGA
          1 ATTGATTAATGTGAAAAACCATGA

               
       2282 ATT
          1 ATT

       2285 TCATACCGTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.45, C:0.08, G:0.16, T:0.31


Consensus pattern (24 bp):   
ATTGATTAATGTGAAAAACCATGA
Done.