Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01784.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 610

Length: 1018
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29


Found at i:107 original size:11 final size:12

Alignment explanation


    Indices: 85--118  Score: 52
    Period size: 11  Copynumber: 2.8  Consensus size: 12

         75 AGATTTTTAA

                         
         85 TTTTCATTTTTCC
          1 TTTTC-TTTTTCC

                        
         98 TTTT-TTTTTCC
          1 TTTTCTTTTTCC

                      
        109 TTTTCTTTTT
          1 TTTTCTTTTT

        119 TGTCGTTGAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  11   11  0.55
  12    5  0.25
  13    4  0.20

ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79


Consensus pattern (12 bp):   
TTTTCTTTTTCC
Done.