Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01788.F9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4246
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30


Found at i:3662 original size:16 final size:16

Alignment explanation


    Indices: 3641--3673  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       3631 CTCTAAGGAG

                            
       3641 CATACTTATATTTTGC
          1 CATACTTATATTTTGC

                            
       3657 CATACTTATATTTTGC
          1 CATACTTATATTTTGC

             
       3673 C
          1 C

       3674 TTTGCAATAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.24, C:0.21, G:0.06, T:0.48


Consensus pattern (16 bp):   
CATACTTATATTTTGC
Done.