Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01796.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 433

Length: 723
ACGTcount: A:0.21, C:0.13, G:0.33, T:0.33


Found at i:311 original size:30 final size:30

Alignment explanation


    Indices: 270--341  Score: 83
    Period size: 30  Copynumber: 2.4  Consensus size: 30

        260 CGGTTGGCCT

                *            *             
        270 GGTGCTGGTGGCGGCT-TAGGTGGTGGGGGA
          1 GGTGGTGGTGGCGG-TGGAGGTGGTGGGGGA

                             *        *   
        300 GGTGGTGGTGGCGGTGGCGGTGGTGGTGGA
          1 GGTGGTGGTGGCGGTGGAGGTGGTGGGGGA

                 *      
        330 GGTGGGGGTGGC
          1 GGTGGTGGTGGC

        342 AAAGGAGGTG


Statistics
Matches: 36,  Mismatches: 5, Indels: 2
        0.84            0.12        0.05

Matches are distributed among these distances:
  29    1  0.03
  30   35  0.97

ACGTcount: A:0.04, C:0.08, G:0.65, T:0.22


Consensus pattern (30 bp):   
GGTGGTGGTGGCGGTGGAGGTGGTGGGGGA

Found at i:315 original size:12 final size:12

Alignment explanation


    Indices: 287--340  Score: 54
    Period size: 12  Copynumber: 4.5  Consensus size: 12

        277 GTGGCGGCTT

                     *  
        287 AGGTGGTGGGGG
          1 AGGTGGTGGTGG

                        
        299 AGGTGGTGGTGG
          1 AGGTGGTGGTGG

            *     *     
        311 CGGTGGCGGTGG
          1 AGGTGGTGGTGG

            *     *     
        323 TGGTGGAGGTGG
          1 AGGTGGTGGTGG

            *     
        335 GGGTGG
          1 AGGTGG

        341 CAAAGGAGGT


Statistics
Matches: 36,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  12   36  1.00

ACGTcount: A:0.06, C:0.04, G:0.70, T:0.20


Consensus pattern (12 bp):   
AGGTGGTGGTGG
Done.