Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01796.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 397

Length: 662
ACGTcount: A:0.21, C:0.12, G:0.36, T:0.31


Found at i:250 original size:30 final size:30

Alignment explanation


    Indices: 209--280  Score: 83
    Period size: 30  Copynumber: 2.4  Consensus size: 30

        199 CGGTTGGCCT

                *            *             
        209 GGTGCTGGTGGCGGCT-TAGGTGGTGGGGGA
          1 GGTGGTGGTGGCGG-TGGAGGTGGTGGGGGA

                             *        *   
        239 GGTGGTGGTGGCGGTGGCGGTGGTGGTGGA
          1 GGTGGTGGTGGCGGTGGAGGTGGTGGGGGA

                 *      
        269 GGTGGGGGTGGC
          1 GGTGGTGGTGGC

        281 AAAGGAGGTG


Statistics
Matches: 36,  Mismatches: 5, Indels: 2
        0.84            0.12        0.05

Matches are distributed among these distances:
  29    1  0.03
  30   35  0.97

ACGTcount: A:0.04, C:0.08, G:0.65, T:0.22


Consensus pattern (30 bp):   
GGTGGTGGTGGCGGTGGAGGTGGTGGGGGA

Found at i:254 original size:12 final size:12

Alignment explanation


    Indices: 226--279  Score: 54
    Period size: 12  Copynumber: 4.5  Consensus size: 12

        216 GTGGCGGCTT

                     *  
        226 AGGTGGTGGGGG
          1 AGGTGGTGGTGG

                        
        238 AGGTGGTGGTGG
          1 AGGTGGTGGTGG

            *     *     
        250 CGGTGGCGGTGG
          1 AGGTGGTGGTGG

            *     *     
        262 TGGTGGAGGTGG
          1 AGGTGGTGGTGG

            *     
        274 GGGTGG
          1 AGGTGG

        280 CAAAGGAGGT


Statistics
Matches: 36,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  12   36  1.00

ACGTcount: A:0.06, C:0.04, G:0.70, T:0.20


Consensus pattern (12 bp):   
AGGTGGTGGTGG
Done.