Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01797.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4684
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27


Found at i:3430 original size:15 final size:16

Alignment explanation


    Indices: 3412--3442  Score: 55
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       3402 TTCAAGAGCA

                            
       3412 AAAGGA-AAACATTTG
          1 AAAGGAGAAACATTTG

                            
       3427 AAAGGAGAAACATTTG
          1 AAAGGAGAAACATTTG

       3443 CATGGAATGA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15    6  0.40
  16    9  0.60

ACGTcount: A:0.52, C:0.06, G:0.23, T:0.19


Consensus pattern (16 bp):   
AAAGGAGAAACATTTG

Done.