Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01819.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 773

Length: 1289
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32


Found at i:335 original size:42 final size:42

Alignment explanation


    Indices: 276--362  Score: 174
    Period size: 42  Copynumber: 2.1  Consensus size: 42

        266 CAGGAAAGAT

                                                      
        276 CTTATTCAAAAGACTGTTGATGTTAGTATATGTTTATCCTAA
          1 CTTATTCAAAAGACTGTTGATGTTAGTATATGTTTATCCTAA

                                                      
        318 CTTATTCAAAAGACTGTTGATGTTAGTATATGTTTATCCTAA
          1 CTTATTCAAAAGACTGTTGATGTTAGTATATGTTTATCCTAA

               
        360 CTT
          1 CTT

        363 TTCTTTTCTT


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  42   45  1.00

ACGTcount: A:0.30, C:0.13, G:0.14, T:0.44


Consensus pattern (42 bp):   
CTTATTCAAAAGACTGTTGATGTTAGTATATGTTTATCCTAA
Done.