Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01822.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 854

Length: 1424
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29


Found at i:251 original size:4 final size:4

Alignment explanation


    Indices: 242--271  Score: 60
    Period size: 4  Copynumber: 7.5  Consensus size: 4

        232 CCACTCCTCA

                                                 
        242 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT
          1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT

        272 GCCCCATCTC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   26  1.00

ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77


Consensus pattern (4 bp):   
TTTC

Done.