Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01828.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 963

Length: 1605
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.35


Found at i:466 original size:21 final size:22

Alignment explanation


    Indices: 440--481  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 22

        430 GTGTTTTTTT

                  * *             
        440 TCTTTTTTTTTCTTTG-GCTTA
          1 TCTTTTCTGTTCTTTGTGCTTA

                                 
        461 TCTTTTCTGTTCTTTGTGCTT
          1 TCTTTTCTGTTCTTTGTGCTT

        482 TGGGGCAAAC


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  21   14  0.78
  22    4  0.22

ACGTcount: A:0.02, C:0.17, G:0.12, T:0.69


Consensus pattern (22 bp):   
TCTTTTCTGTTCTTTGTGCTTA
Done.