Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01850.F15

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3254
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32


Found at i:2965 original size:9 final size:9

Alignment explanation


    Indices: 2953--2984  Score: 55
    Period size: 9  Copynumber: 3.6  Consensus size: 9

       2943 GAGGAAAAAG

                     
       2953 AGAAGCAGA
          1 AGAAGCAGA

                     
       2962 AGAAGCAGA
          1 AGAAGCAGA

                *    
       2971 AGAAACAGA
          1 AGAAGCAGA

                 
       2980 AGAAG
          1 AGAAG

       2985 AGAGATTCAA


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.59, C:0.09, G:0.31, T:0.00


Consensus pattern (9 bp):   
AGAAGCAGA
Done.