Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01854.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3501
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30


Found at i:1498 original size:24 final size:25

Alignment explanation


    Indices: 1444--1500  Score: 71
    Period size: 24  Copynumber: 2.3  Consensus size: 25

       1434 TTACACAAAT

                                 *    
       1444 TAAATTCAAATTAATTAAATTCTAAA
          1 TAAA-TCAAATTAATTAAATTATAAA

            *                      * 
       1470 AAAATCAAATTAATT-AATTATAGA
          1 TAAATCAAATTAATTAAATTATAAA

                   
       1494 TAAATCA
          1 TAAATCA

       1501 GATAAAAAGT


Statistics
Matches: 27,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  24   13  0.48
  25   11  0.41
  26    3  0.11

ACGTcount: A:0.56, C:0.07, G:0.02, T:0.35


Consensus pattern (25 bp):   
TAAATCAAATTAATTAAATTATAAA
Done.