Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01149.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 904

Length: 1507
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32


Found at i:1148 original size:21 final size:21

Alignment explanation


    Indices: 1124--1165  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1114 AGCCAAAGAA

                                 
       1124 AAAATTGCGATTGAATCGACG
          1 AAAATTGCGATTGAATCGACG

                                 
       1145 AAAATTGCGATTGAATCGACG
          1 AAAATTGCGATTGAATCGACG

       1166 GCAGAGCACA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24


Consensus pattern (21 bp):   
AAAATTGCGATTGAATCGACG
Done.