Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01877.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1911
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28


Found at i:328 original size:3 final size:3

Alignment explanation


    Indices: 320--372  Score: 97
    Period size: 3  Copynumber: 17.7  Consensus size: 3

        310 AACGCCTCGT

                                 *                                         
        320 TTC TTC TTC TTC TTC TGC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC

                  
        368 TTC TT
          1 TTC TT

        373 TGTTCGTATA


Statistics
Matches: 48,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   3   48  1.00

ACGTcount: A:0.00, C:0.32, G:0.02, T:0.66


Consensus pattern (3 bp):   
TTC

Done.