Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01897.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 688

Length: 1148
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36


Found at i:440 original size:24 final size:20

Alignment explanation


    Indices: 397--436  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        387 TTCCTCAGTC

                                
        397 CTTCTACCTCCCTCTTTAAT
          1 CTTCTACCTCCCTCTTTAAT

                                
        417 CTTCTACCTCCCTCTTTAAT
          1 CTTCTACCTCCCTCTTTAAT

        437 TAATGACGCC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.15, C:0.40, G:0.00, T:0.45


Consensus pattern (20 bp):   
CTTCTACCTCCCTCTTTAAT

Found at i:569 original size:15 final size:16

Alignment explanation


    Indices: 545--590  Score: 53
    Period size: 15  Copynumber: 3.1  Consensus size: 16

        535 CATTTATACA

                 *          
        545 CTCTTTTCTTTCT-TT
          1 CTCTTCTCTTTCTCTT

                            
        560 CTCTTCTC-TTCTCTT
          1 CTCTTCTCTTTCTCTT

              *             
        575 CTGTTC-CTTTCTCTT
          1 CTCTTCTCTTTCTCTT

             
        590 C
          1 C

        591 GTGTCTCAGT


Statistics
Matches: 27,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
  14    5  0.19
  15   22  0.81

ACGTcount: A:0.00, C:0.35, G:0.02, T:0.63


Consensus pattern (16 bp):   
CTCTTCTCTTTCTCTT
Done.