Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01900.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3091
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33


Found at i:158 original size:18 final size:18

Alignment explanation


    Indices: 135--170  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        125 ATTTCATCAG

                              
        135 CTTCTTGTATATTTTTAT
          1 CTTCTTGTATATTTTTAT

                              
        153 CTTCTTGTATATTTTTAT
          1 CTTCTTGTATATTTTTAT

        171 AAAAGGACGG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.17, C:0.11, G:0.06, T:0.67


Consensus pattern (18 bp):   
CTTCTTGTATATTTTTAT
Done.