Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01904.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 822

Length: 1370
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28


Found at i:19 original size:2 final size:2

Alignment explanation


    Indices: 13--55  Score: 77
    Period size: 2  Copynumber: 21.5  Consensus size: 2

          3 CACTCACTTG

                                                                     *    
         13 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT GT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

             
         55 C
          1 C

         56 CGCCCTTTTC


Statistics
Matches: 39,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   39  1.00

ACGTcount: A:0.00, C:0.49, G:0.02, T:0.49


Consensus pattern (2 bp):   
CT

Done.