Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01931.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5895
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27


Found at i:33 original size:2 final size:2

Alignment explanation


    Indices: 21--49  Score: 51
    Period size: 2  Copynumber: 15.0  Consensus size: 2

         11 AACGCTACAT

                                                        
         21 TC TC T- TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

         50 AGCAAAGAGA


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   1    1  0.04
   2   25  0.96

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (2 bp):   
TC

Done.