Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01933.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3645
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27


Found at i:292 original size:14 final size:14

Alignment explanation


    Indices: 275--303  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        265 TTTCTTTGCC

                          
        275 TTTTTT-TGAAGGT
          1 TTTTTTATGAAGGT

                          
        288 TTTTTTATGAAGGT
          1 TTTTTTATGAAGGT

              
        302 TT
          1 TT

        304 CCTTTTAGAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    6  0.40
  14    9  0.60

ACGTcount: A:0.17, C:0.00, G:0.21, T:0.62


Consensus pattern (14 bp):   
TTTTTTATGAAGGT
Done.