Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01161.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 991

Length: 1653
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36


Found at i:1019 original size:18 final size:18

Alignment explanation


    Indices: 985--1019  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        975 TTATAAAAAG

                      * *     
        985 ATGTGAGTTAGATTGTAC
          1 ATGTGAGTTAAAGTGTAC

                             
       1003 ATGTGAGTTAAAGTGTA
          1 ATGTGAGTTAAAGTGTA

       1020 TTAAAGTTTA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.31, C:0.03, G:0.29, T:0.37


Consensus pattern (18 bp):   
ATGTGAGTTAAAGTGTAC
Done.