Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01964.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4018
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31


Found at i:339 original size:2 final size:2

Alignment explanation


    Indices: 334--370  Score: 56
    Period size: 2  Copynumber: 18.5  Consensus size: 2

        324 CCCCCAACAA

                                        *              *           
        334 TC TC TC TC TC TC TC TC TC TG TC TC TC TC TT TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T

        371 GCGTCGGTCT


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.00, C:0.43, G:0.03, T:0.54


Consensus pattern (2 bp):   
TC

Done.