Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01165.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 507

Length: 845
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34


Found at i:381 original size:13 final size:13

Alignment explanation


    Indices: 347--382  Score: 54
    Period size: 13  Copynumber: 2.8  Consensus size: 13

        337 TTGTGATGAA

                         
        347 AAAATAAAAAAAG
          1 AAAATAAAAAAAG

                *        
        360 AAAAGAAAAAAAG
          1 AAAATAAAAAAAG

               *      
        373 AAACTAAAAA
          1 AAAATAAAAA

        383 CGAAAAGAGA


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  13   20  1.00

ACGTcount: A:0.83, C:0.03, G:0.08, T:0.06


Consensus pattern (13 bp):   
AAAATAAAAAAAG
Done.