Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01978.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3642
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31


Found at i:348 original size:18 final size:18

Alignment explanation


    Indices: 325--360  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        315 TTTACTTACA

                              
        325 CAAAAAACACCAACAACC
          1 CAAAAAACACCAACAACC

                  *    *      
        343 CAAAAATCACCGACAACC
          1 CAAAAAACACCAACAACC

        361 ATGTAAAGTA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.56, C:0.39, G:0.03, T:0.03


Consensus pattern (18 bp):   
CAAAAAACACCAACAACC
Done.