Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01985.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1820
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28


Found at i:1794 original size:20 final size:21

Alignment explanation


    Indices: 1756--1795  Score: 55
    Period size: 22  Copynumber: 1.9  Consensus size: 21

       1746 CCCATTTTTC

                    *             
       1756 ATTCTTTTTTACGTTTAAATTT
          1 ATTCTTTTATACG-TTAAATTT

                               
       1778 ATTCTTTTATACG-TAAAT
          1 ATTCTTTTATACGTTAAAT

       1796 CTAGAGACAG


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20    5  0.29
  22   12  0.71

ACGTcount: A:0.28, C:0.10, G:0.05, T:0.57


Consensus pattern (21 bp):   
ATTCTTTTATACGTTAAATTT
Done.