Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01989.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 886

Length: 1478
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35


Found at i:263 original size:30 final size:30

Alignment explanation


    Indices: 227--287  Score: 122
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        217 GCAAGAAGAG

                                          
        227 AAAGAAATATCTTGGTTTTTTTTTGCTGAT
          1 AAAGAAATATCTTGGTTTTTTTTTGCTGAT

                                          
        257 AAAGAAATATCTTGGTTTTTTTTTGCTGAT
          1 AAAGAAATATCTTGGTTTTTTTTTGCTGAT

             
        287 A
          1 A

        288 TTATTCTTCC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   31  1.00

ACGTcount: A:0.28, C:0.07, G:0.16, T:0.49


Consensus pattern (30 bp):   
AAAGAAATATCTTGGTTTTTTTTTGCTGAT
Done.