Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g01997.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4105
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Found at i:3923 original size:12 final size:12

Alignment explanation


    Indices: 3908--3942  Score: 61
    Period size: 12  Copynumber: 2.9  Consensus size: 12

       3898 AAAGAGGAGA

                        
       3908 AGAAGAAGGATG
          1 AGAAGAAGGATG

                *       
       3920 AGAATAAGGATG
          1 AGAAGAAGGATG

                       
       3932 AGAAGAAGGAT
          1 AGAAGAAGGAT

       3943 AGCCGGAAAG


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  12   21  1.00

ACGTcount: A:0.51, C:0.00, G:0.37, T:0.11


Consensus pattern (12 bp):   
AGAAGAAGGATG
Done.