Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01167.N4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2485
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36


Found at i:1162 original size:32 final size:33

Alignment explanation


    Indices: 1116--1197  Score: 91
    Period size: 32  Copynumber: 2.6  Consensus size: 33

       1106 AGAGTTGGTA

                 *   *                  *     
       1116 ATATACATAGATATATATGA-GTGGG-GTTGTAT
          1 ATATATATAAATATATATGACGTGGGTGAT-TAT

                                             
       1148 ATATATATAAATATATAT-ACGTGGGTGATTAT
          1 ATATATATAAATATATATGACGTGGGTGATTAT

             *                 
       1180 ACATATAT-AATATATATG
          1 ATATATATAAATATATATG

       1198 CATGGTTCTA


Statistics
Matches: 43,  Mismatches: 4, Indels: 6
        0.81            0.08        0.11

Matches are distributed among these distances:
  31   10  0.23
  32   31  0.72
  33    2  0.05

ACGTcount: A:0.40, C:0.04, G:0.17, T:0.39


Consensus pattern (33 bp):   
ATATATATAAATATATATGACGTGGGTGATTAT

Found at i:1571 original size:25 final size:25

Alignment explanation


    Indices: 1542--1590  Score: 64
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1532 TGCGTAATAA

                   *                  
       1542 AATGTGATTAATTAAATA-TGTTGGC
          1 AATGTGAATAATTAAA-ACTGTTGGC

                      *             
       1567 AATGTGAATACTTAAAACTGTTGG
          1 AATGTGAATAATTAAAACTGTTGG

       1591 ATATCGTTGG


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  24    1  0.05
  25   20  0.95

ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37


Consensus pattern (25 bp):   
AATGTGAATAATTAAAACTGTTGGC
Done.