Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02012.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 900

Length: 1500
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40


Found at i:99 original size:33 final size:33

Alignment explanation


    Indices: 38--102  Score: 85
    Period size: 33  Copynumber: 2.0  Consensus size: 33

         28 ACTTTACCCT

                           **                
         38 TCCATTTCTTTCTCAGGTCTAGACCTTTCTTCA
          1 TCCATTTCTTTCTCACCTCTAGACCTTTCTTCA

                              * *  *        
         71 TCCATTTCTTTCTCACCTTTGGAGCTTTCTTC
          1 TCCATTTCTTTCTCACCTCTAGACCTTTCTTC

        103 TTTTTTTCAT


Statistics
Matches: 27,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  33   27  1.00

ACGTcount: A:0.12, C:0.31, G:0.09, T:0.48


Consensus pattern (33 bp):   
TCCATTTCTTTCTCACCTCTAGACCTTTCTTCA
Done.