Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02021.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3170
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31


Found at i:1946 original size:29 final size:29

Alignment explanation


    Indices: 1866--1952  Score: 86
    Period size: 31  Copynumber: 2.9  Consensus size: 29

       1856 TTGAGTTCAA

                  *                       
       1866 AAAGGTCTGGCTCTTATTTGAGCACTTCCC
          1 AAAGGTTTGGCT-TTATTTGAGCACTTCCC

                 *       *   *            *
       1896 AAATGTTTTGGCCATTACTTGAGCACTT-CG
          1 AAA-GGTTTGG-CTTTATTTGAGCACTTCCC

                                       
       1926 AAAGGTTTGGCTTTCATTTGAGCACTT
          1 AAAGGTTTGGCTTT-ATTTGAGCACTT

       1953 TTGCAAAGGT


Statistics
Matches: 46,  Mismatches: 8, Indels: 7
        0.75            0.13        0.11

Matches are distributed among these distances:
  28    3  0.07
  29   17  0.37
  30    7  0.15
  31   18  0.39
  32    1  0.02

ACGTcount: A:0.22, C:0.21, G:0.21, T:0.37


Consensus pattern (29 bp):   
AAAGGTTTGGCTTTATTTGAGCACTTCCC
Done.