Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02027.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2475
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.36


Found at i:2066 original size:34 final size:34

Alignment explanation


    Indices: 2023--2090  Score: 136
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       2013 TTTGAAGGGA

                                              
       2023 AAAGAAAGGTATCTATCTTGCCACTCTTTCACAC
          1 AAAGAAAGGTATCTATCTTGCCACTCTTTCACAC

                                              
       2057 AAAGAAAGGTATCTATCTTGCCACTCTTTCACAC
          1 AAAGAAAGGTATCTATCTTGCCACTCTTTCACAC

       2091 TATCTTTATT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   34  1.00

ACGTcount: A:0.32, C:0.26, G:0.12, T:0.29


Consensus pattern (34 bp):   
AAAGAAAGGTATCTATCTTGCCACTCTTTCACAC
Done.