Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02028.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4457
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26


Found at i:3933 original size:84 final size:83

Alignment explanation


    Indices: 3768--3922  Score: 256
    Period size: 83  Copynumber: 1.9  Consensus size: 83

       3758 GTCAACCGAG

                                          * *     *                          
       3768 GCTATGAAGGAGGAGAAGACTCCATTTGATGAGCAAATGTTTGGCACAAAAGACTGGGATAGTCA
          1 GCTATGAAGGAGGAGAAGACTCCATTTGATCAACAAATATTTGGCACAAAAGACTGGGATAGTCA

                              
       3833 AGTGTGCAAGTCAGATTT
         66 AGTGTGCAAGTCAGATTT

                                              *                          *   
       3851 GCTATGAAGGAGGAGAAGACTCCATTTGATCAACGAATATTTAGGCACAAAAGACTGGGATTGTC
          1 GCTATGAAGGAGGAGAAGACTCCATTTGATCAACAAATATTT-GGCACAAAAGACTGGGATAGTC

                   
       3916 AAGTGTG
         65 AAGTGTG

       3923 TGAGTGAGAT


Statistics
Matches: 66,  Mismatches: 5, Indels: 1
        0.92            0.07        0.01

Matches are distributed among these distances:
  83   38  0.58
  84   28  0.42

ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24


Consensus pattern (83 bp):   
GCTATGAAGGAGGAGAAGACTCCATTTGATCAACAAATATTTGGCACAAAAGACTGGGATAGTCA
AGTGTGCAAGTCAGATTT
Done.