Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02043.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5742
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30


Found at i:3284 original size:6 final size:6

Alignment explanation


    Indices: 3273--3297  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

       3263 ATGCCCACTC

                                         
       3273 TGTCTT TGTCTT TGTCTT TGTCTT T
          1 TGTCTT TGTCTT TGTCTT TGTCTT T

       3298 TCCCTCCTCC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.00, C:0.16, G:0.16, T:0.68


Consensus pattern (6 bp):   
TGTCTT

Done.