Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02043.M4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5411
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30


Found at i:3019 original size:6 final size:6

Alignment explanation


    Indices: 3008--3032  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

       2998 ATGCCCACTC

                                         
       3008 TGTCTT TGTCTT TGTCTT TGTCTT T
          1 TGTCTT TGTCTT TGTCTT TGTCTT T

       3033 TCCCTCCTCC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.00, C:0.16, G:0.16, T:0.68


Consensus pattern (6 bp):   
TGTCTT

Done.