Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02059.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7220
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30


Found at i:4795 original size:20 final size:20

Alignment explanation


    Indices: 4770--4807  Score: 67
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       4760 TTAAACCGTC

                  *             
       4770 GTTTATTATTTTATTATTCG
          1 GTTTATCATTTTATTATTCG

                              
       4790 GTTTATCATTTTATTATT
          1 GTTTATCATTTTATTATT

       4808 ATTTGTGGGT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.21, C:0.05, G:0.08, T:0.66


Consensus pattern (20 bp):   
GTTTATCATTTTATTATTCG

Found at i:5314 original size:42 final size:42

Alignment explanation


    Indices: 5268--5355  Score: 113
    Period size: 42  Copynumber: 2.1  Consensus size: 42

       5258 GCGACAGCCT

                               **                     
       5268 TGATGACGATCAACTCCAAGGCAGCGACAGCCATAATGACGA
          1 TGATGACGATCAACTCCAAAACAGCGACAGCCATAATGACGA

                       *                * *   *      *
       5310 TGATGACGATCTACTCCAAAACAGCGACTGGCATGATGACGG
          1 TGATGACGATCAACTCCAAAACAGCGACAGCCATAATGACGA

                
       5352 TGAT
          1 TGAT

       5356 CATGATTGTG


Statistics
Matches: 39,  Mismatches: 7, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  42   39  1.00

ACGTcount: A:0.33, C:0.24, G:0.25, T:0.18


Consensus pattern (42 bp):   
TGATGACGATCAACTCCAAAACAGCGACAGCCATAATGACGA
Done.