Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02060.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2236
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28


Found at i:330 original size:42 final size:42

Alignment explanation


    Indices: 284--371  Score: 113
    Period size: 42  Copynumber: 2.1  Consensus size: 42

        274 GCGACAGCCT

                               **                     
        284 TGATGACGATCAACTCCAAGGCAGCGACAGCCATAATGACGA
          1 TGATGACGATCAACTCCAAAACAGCGACAGCCATAATGACGA

                       *                * *   *      *
        326 TGATGACGATCTACTCCAAAACAGCGACTGGCATGATGACGG
          1 TGATGACGATCAACTCCAAAACAGCGACAGCCATAATGACGA

                
        368 TGAT
          1 TGAT

        372 CATGATTGTG


Statistics
Matches: 39,  Mismatches: 7, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  42   39  1.00

ACGTcount: A:0.33, C:0.24, G:0.25, T:0.18


Consensus pattern (42 bp):   
TGATGACGATCAACTCCAAAACAGCGACAGCCATAATGACGA
Done.