Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02077.P5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4604
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.34


Found at i:1871 original size:26 final size:26

Alignment explanation


    Indices: 1838--1947  Score: 175
    Period size: 26  Copynumber: 4.2  Consensus size: 26

       1828 TGATACAAAT

                                      
       1838 TGATAATGGGTTAGGTAAATGTTCCA
          1 TGATAATGGGTTAGGTAAATGTTCCA

               *     *          *     
       1864 TGACAATGGATTAGGTAAATATTCCA
          1 TGATAATGGGTTAGGTAAATGTTCCA

                                   *  
       1890 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTCCA

                                   *  
       1916 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTCCA

                  
       1942 TGATAA
          1 TGATAA

       1948 GAATTACATG


Statistics
Matches: 77,  Mismatches: 7, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  26   77  1.00

ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35


Consensus pattern (26 bp):   
TGATAATGGGTTAGGTAAATGTTCCA

Done.