Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02081.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3119
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30


Found at i:1812 original size:22 final size:22

Alignment explanation


    Indices: 1784--1826  Score: 86
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1774 GCACCCGTTA

                                  
       1784 GAAAAATATGCTGGGGAGCTAT
          1 GAAAAATATGCTGGGGAGCTAT

                                 
       1806 GAAAAATATGCTGGGGAGCTA
          1 GAAAAATATGCTGGGGAGCTA

       1827 GTGCCTTACA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.37, C:0.09, G:0.33, T:0.21


Consensus pattern (22 bp):   
GAAAAATATGCTGGGGAGCTAT
Done.