Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02082.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 642

Length: 1070
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.26


Found at i:59 original size:2 final size:2

Alignment explanation


    Indices: 52--88  Score: 74
    Period size: 2  Copynumber: 18.5  Consensus size: 2

         42 AAACCCCAAA

                                                                   
         52 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A

         89 AGGAAAAGAA


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00


Consensus pattern (2 bp):   
AG

Done.