Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02090.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3654
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.34


Found at i:1322 original size:24 final size:24

Alignment explanation


    Indices: 1290--1361  Score: 90
    Period size: 28  Copynumber: 2.8  Consensus size: 24

       1280 TAAGTGATCA

                                    
       1290 TTATTTCTCATGTTCTTTTACCTT
          1 TTATTTCTCATGTTCTTTTACCTT

                         *     *        
       1314 TTATTTCTCATCCTTTGCCCTTTACCTT
          1 TTATTTCTCAT--GTT--CTTTTACCTT

                                
       1342 TTATTTCTCATGTTCTTTTA
          1 TTATTTCTCATGTTCTTTTA

       1362 GTCTCTTATG


Statistics
Matches: 40,  Mismatches: 4, Indels: 8
        0.77            0.08        0.15

Matches are distributed among these distances:
  24   16  0.40
  26    4  0.10
  28   20  0.50

ACGTcount: A:0.12, C:0.24, G:0.04, T:0.60


Consensus pattern (24 bp):   
TTATTTCTCATGTTCTTTTACCTT
Done.