Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02103.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3139
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34


Found at i:27 original size:4 final size:4

Alignment explanation


    Indices: 20--46  Score: 54
    Period size: 4  Copynumber: 6.8  Consensus size: 4

         10 ATTTCTCTCT

                                             
         20 CTCG CTCG CTCG CTCG CTCG CTCG CTC
          1 CTCG CTCG CTCG CTCG CTCG CTCG CTC

         47 CAAAGAGTTG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   23  1.00

ACGTcount: A:0.00, C:0.52, G:0.22, T:0.26


Consensus pattern (4 bp):   
CTCG

Done.