Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02182.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2858
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32


Found at i:2672 original size:15 final size:16

Alignment explanation


    Indices: 2652--2686  Score: 56
    Period size: 14  Copynumber: 2.3  Consensus size: 16

       2642 AGGTTTTCCA

                            
       2652 TTTTTTT-TTCTTTT-
          1 TTTTTTTATTCTTTTG

                            
       2666 TTTTTTTATTCTTTTG
          1 TTTTTTTATTCTTTTG

                 
       2682 TTTTT
          1 TTTTT

       2687 CTGTCAATTC


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  14    7  0.37
  15    7  0.37
  16    5  0.26

ACGTcount: A:0.03, C:0.06, G:0.03, T:0.89


Consensus pattern (16 bp):   
TTTTTTTATTCTTTTG
Done.