Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01179.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1777
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.35


Found at i:783 original size:22 final size:22

Alignment explanation


    Indices: 758--802  Score: 72
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        748 GTTCTTAATA

                        **        
        758 TTGTATATAAACGTGATTCTTG
          1 TTGTATATAAACCAGATTCTTG

                                  
        780 TTGTATATAAACCAGATTCTTG
          1 TTGTATATAAACCAGATTCTTG

             
        802 T
          1 T

        803 CCAAAACGCT


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.29, C:0.11, G:0.16, T:0.44


Consensus pattern (22 bp):   
TTGTATATAAACCAGATTCTTG
Done.