Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02195.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 934

Length: 1558
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Found at i:1432 original size:27 final size:26

Alignment explanation


    Indices: 1371--1433  Score: 63
    Period size: 27  Copynumber: 2.3  Consensus size: 26

       1361 ACTCTATTTT

                                       
       1371 ATTTATATTAGGATCATTAATATTAAG
          1 ATTT-TATTAGGATCATTAATATTAAG

               *          *       *   * 
       1398 ATAATTATTAGGATTATTTAATTTTAGG
          1 AT-TTTATTAGGATCA-TTAATATTAAG

                    
       1426 ATTTTATT
          1 ATTTTATT

       1434 TTAATTATCT


Statistics
Matches: 29,  Mismatches: 5, Indels: 4
        0.76            0.13        0.11

Matches are distributed among these distances:
  27   17  0.59
  28   12  0.41

ACGTcount: A:0.37, C:0.02, G:0.11, T:0.51


Consensus pattern (26 bp):   
ATTTTATTAGGATCATTAATATTAAG
Done.