Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02203.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2277
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32


Found at i:137 original size:10 final size:9

Alignment explanation


    Indices: 122--149  Score: 56
    Period size: 9  Copynumber: 3.1  Consensus size: 9

        112 CCCTCAACTG

                     
        122 AAAAAAAAT
          1 AAAAAAAAT

                     
        131 AAAAAAAAT
          1 AAAAAAAAT

                     
        140 AAAAAAAAT
          1 AAAAAAAAT

             
        149 A
          1 A

        150 CAGAAAGCTA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   19  1.00

ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11


Consensus pattern (9 bp):   
AAAAAAAAT
Done.