Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01181.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2397
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.32


Found at i:59 original size:14 final size:14

Alignment explanation


    Indices: 40--68  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

         30 CCGATACCAA

                          
         40 ACAGCTTCAATCTC
          1 ACAGCTTCAATCTC

                          
         54 ACAGCTTCAATCTC
          1 ACAGCTTCAATCTC

             
         68 A
          1 A

         69 GAATCAACCC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.31, C:0.34, G:0.07, T:0.28


Consensus pattern (14 bp):   
ACAGCTTCAATCTC
Done.